Here is a list of all files with brief descriptions:

[detail level 12345]

► speeduino
► src
► BackupSram
BackupSramAsEEPROM.cpp
BackupSramAsEEPROM.h
► controllers
► aircon
airconController.cpp
airconController.h
airconController_details.cpp
airconController_details.h
► auxChannels
auxChannelController.cpp
auxChannelController.h
auxChannelController_detail.h
► boost
boostController.cpp
boostController.h
► fan
fanController.cpp
fanController.h
► fuelPump
fuelPumpController.cpp
fuelPumpController.h
fuelPumpController_detail.h
► idle
idle.cpp
idle.h
idleController_state.cpp
idleController_state.h
stepper.cpp
stepper.h
► ignBypass
ignBypassControl.cpp
ignBypassControl.h
ignBypassControl_detail.h
► launch
launchController.cpp
launchController.h
► nitrous
nitrousController.cpp
nitrousController.h
nitrousController_state.h
► progammableIO
programmableIOControl.cpp
programmableIOControl.h
programmableIOControl_details.cpp
programmableIOControl_details.h	Not used outside of programmableIOControl.cpp, but needs to be shared with unit tests
► tacho
tachoController.cpp
tachoController.h
tachoController_detail.h
► tsCommand
tsCommandController.cpp
tsCommandController.h
► vvt
vvtController.cpp
vvtController.h
► decoders
► shared
crank_angle_calculator.cpp
crank_angle_calculator.h	Crank calculations. To be reused by individual decoders
decoder_state.cpp
decoder_state.h
perToothIgnition.cpp
perToothIgnition.h
rev_time_calcs.cpp
rev_time_calcs.h
36minus21.cpp
36minus21.h	36-2-1 / Mistsubishi 4B11 decoder: a crank based trigger with a nominal 36 teeth, but with 1 single and 1 double missing tooth
36minus222.cpp
36minus222.h	36-2-2-2 crank based trigger wheel
420a.cpp
420a.h	DSM 420a, For the DSM Eclipse with 16 teeth total on the crank
4g63.cpp
4g63.h	Mitsubishi 4G63 / NA/NB Miata + MX-5 / 4/2 decoder
audi135.cpp
audi135.h	Decoder for Audi with 135 teeth on the crank and 1 tooth on the cam
basicDistributor.cpp
basicDistributor.h	Basic Distributor where tooth count is equal to the number of cylinders and teeth are evenly spaced on the cam
daihatsu.cpp
daihatsu.h	Daihatsu +1 trigger for 3 and 4 cylinder engines
drz400.cpp
drz400.h	Daihatsu +1 trigger for 3 and 4 cylinder engines
dualWheel.cpp
dualWheel.h	A decoder for 2 wheels located either both on the crank or with the primary on the crank and the secondary on the cam
fordtfi.cpp
fordtfi.h	Distributor mounted signal tooth wheel. Same number of teeth as cylinders
gm24x.cpp
gm24x.h	GM 24X Decoder (eg early LS1 1996-2005)
gm7x.cpp
gm7x.h	GM 7X trigger wheel decoder with six equally spaced teeth and a seventh tooth for cylinder identification
harley.cpp
harley.h	Harley Davidson (V2) with 2 unevenly Spaced Teeth
hondad17.cpp
hondad17.h	Honda D17 (1.7 liter 4 cyl SOHC)
hondaj32.cpp
hondaj32.h	Honda J 32 (3.2 liter 6 cyl SOHC) decoder
jeep2000.cpp
jeep2000.h	Jeep 2000 Decoder: 1991 to 2000 6 cylinder Jeep engines
k6a.cpp
k6a.h	Suzuki K6A 3 cylinder engine
mazdaAU.cpp
mazdaau.h	Mazda AU version
miata9905.cpp
miata9905.h	A decoder for Miata '99 to '05 with 4x 70 degree duration teeth running at cam speed
missingTooth.cpp
missingTooth.h	A decoder for a (single) multi-tooth wheel with one of more 'missing' teeth
ngc.cpp
ngc.h	A decoder for vehicles with 4, 6 and 8 cylinder Chrysler NGC pattern
nissan360.cpp
nissan360.h	Nissan 360 tooth on cam (Optical trigger disc inside distributor housing)
non360.cpp
non360.h	A decoder Non-360 Dual wheel with 2 wheels located either both on the crank or with the primary on the crank and the secondary on the cam
renix.cpp
renix.h	Renix 44-2-2 and 66-2-2-2 decoder
rovermems.cpp
rovermems.h	Rover MEMS decoder
st170.cpp
st170.h	Subaru 6/7 Trigger pattern decoder for 6 tooth (irregularly spaced) crank and 7 tooth (also fairly irregular) cam wheels (eg late 90's Impreza 2.2)
subaru6_7.cpp
subaru6_7.h	Subaru 6/7 Trigger pattern decoder for 6 tooth (irregularly spaced) crank and 7 tooth (also fairly irregular) cam wheels (eg late 90's Impreza 2.2)
vmax.cpp
vmax.h	Yamaha Vmax 1990+ with 6 uneven teeth, triggering on the wide lobe
webber.cpp
webber.h	Weber-Marelli trigger setup with 2 wheels, 4 teeth 90deg apart on crank and 2 90deg apart on cam
► FRAM
Fram.cpp
Fram.h
► PID
integerPID.cpp
integerPID.h
integerPID_ideal.cpp
integerPID_ideal.h
PID.cpp
PID.h
PidCore.cpp
PidCore.h
PidTuningParameters.h
► pins
boardInputPin.h	To avoid circular header dependencies boardInputPin_t is a forward declared typedef; include this file in a cpp file to fully define the type
boardOutputPin.h	To avoid circular header dependencies boardOutputPin_t is a forward declared typedef; include this file in a cpp file to fully define the type
digitalPin.cpp
digitalPin.h
fastInputPin.h
fastOutputPin.h
inputPin.h
invertableOutputPin.h
outputPin.h
pinMapping.cpp
pinMapping.h	Pin translation functions
pinNumbers_t.h
port_pin.cpp
port_pin.h
trackedOutputPin.h
► pwm
interruptHandlers.h
PwmOutputChannel.h
► STM32_CAN
STM32_CAN.cpp
STM32_CAN.h
► utils
nominmax.h	Workaround when min() & max() are defined as macros, which generates compile errors in most C++ standard library implementations
static_for.hpp	A compile time unrolled loop
tuple.h
acc_mc33810.cpp
acc_mc33810.h
atomic.h
bit_manip.h	Bit twiddling macros
board_avr2560.cpp
board_avr2560.h
board_definition.h	Inclusion of board specific header files and board related definitions
board_eeprom_adapter.hpp	Used internally by the board to create storage_api_t instances
board_native.cpp
board_native.h
board_stm32_official.cpp
board_stm32_official.h
board_teensy35.cpp
board_teensy35.h
board_teensy41.cpp
board_teensy41.h
board_template.cpp
board_template.h
comms.cpp
comms.h	File for handling all serial requests
comms_CAN.cpp
comms_CAN.h
comms_legacy.cpp
comms_legacy.h
comms_sd.h
comms_secondary.cpp
comms_secondary.h
config_pages.h	The tune page structs and related defines
corrections.cpp
corrections.h
crankMaths.cpp
crankMaths.h	Crank revolution based mathematical functions
decoder_builder.cpp
decoder_builder.h	A builder for decoder_t structures
decoder_init.cpp
decoder_init.h	Decoder initialization and management
decoder_t.cpp
decoder_t.h
decoders.cpp
decoders.h
dwell.cpp
dwell.h
elapsed_time.h	Rollover-safe elapsed time calculations for free-running counters
engineProtection.cpp
engineProtection.h	Engine "protection" via RPM limits
fuel_calcs.cpp
fuel_calcs.h	Pulse width calculations
globals.cpp
globals.h
init.cpp
init.h
load_source.h
logger.cpp
logger.h	File for generating log files and meta data
maths.cpp
maths.h
page_crc.cpp
page_crc.h
pages.cpp
pages.h
preprocessor.h
prog_mem_support.h	Helper methods for items stored in flash memory
resetControl.cpp
resetControl.h	Reset control functionality, to prevent resets while the engine is running (if configured to do so)
rtc_common.cpp
rtc_common.h
schedule_ignition.h
schedule_state_machine.cpp
schedule_state_machine.h
scheduledIO_direct_ign.cpp
scheduledIO_direct_ign.h
scheduledIO_direct_inj.cpp
scheduledIO_direct_inj.h
scheduledIO_ign.cpp
scheduledIO_ign.h
scheduledIO_inj.cpp
scheduledIO_inj.h
scheduler.cpp
scheduler.h
scheduler_fuel_controller.cpp
scheduler_fuel_controller.h	The fuel schedule controller: manages the timing of opening and closing up to 8 injectors
scheduler_ignition_controller.cpp
scheduler_ignition_controller.h
SD_logger.cpp
SD_logger.h
secondaryTables.cpp
secondaryTables.h
sensors.cpp
sensors.h
sensors_map_structs.h
speeduino.ino
statuses.cpp
statuses.h	The statuses struct and related defines
storage.cpp
storage.h	Functions for reading and writing user settings to/from EEPROM
storage_api.cpp
storage_api.h	Defines the required external storage API plus some convenience functions built around that API
storage_details.h
table2d.cpp
table2d.h
table3d.h	3D table data types and functions
table3d_axes.h	3D table axis types and iterators
table3d_interpolate.cpp	Support functions for 3D table interpolation
table3d_interpolate.h	Functions for interpolating values from 3D tables
table3d_typedefs.h	Typedefs for primitive 3D table elements
table3d_visitor.h	Visitor pattern for the 3D table types
timers.cpp
timers.h
unit_testing.h	Unit testability support
units.h	Integer conversions using scale & translate
updates.cpp
updates.h